289fc5efbf
- Add python script to test socket-api cases - Fix issues in socket-api send_recv wasm app - Fix issues in building samples/workload/meshoptimizer - Enhance build script of sample workload
74 lines
2.9 KiB
CMake
74 lines
2.9 KiB
CMake
# Copyright (C) 2019 Intel Corporation. All rights reserved.
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# SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception
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cmake_minimum_required (VERSION 3.14)
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project(bwa_wasm)
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list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/../cmake)
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################ dependencies ################
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find_package(Python3 REQUIRED)
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find_package(WASISDK 16.0 REQUIRED)
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execute_process(
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COMMAND ${Python3_EXECUTABLE} ${CMAKE_CURRENT_LIST_DIR}/../../../test-tools/pick-up-emscripten-headers/collect_files.py --install ../include --loglevel=ERROR
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WORKING_DIRECTORY ${CMAKE_CURRENT_LIST_DIR}
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)
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#######################################
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include(ExternalProject)
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################ libz ################
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ExternalProject_Add(libz_src
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GIT_REPOSITORY https://github.com/madler/zlib.git
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GIT_TAG 04f42ceca40f73e2978b50e93806c2a18c1281fc
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GIT_PROGRESS ON
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GIT_SHALLOW ON
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SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libz
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UPDATE_COMMAND ""
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PATCH_COMMAND ""
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CONFIGURE_COMMAND ""
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BUILD_COMMAND ""
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INSTALL_COMMAND ""
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)
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################ bwa ################
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ExternalProject_Add(bwa
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GIT_REPOSITORY https://github.com/lh3/bwa.git
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GIT_TAG 139f68fc4c3747813783a488aef2adc86626b01b
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GIT_PROGRESS ON
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GIT_SHALLOW ON
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SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/bwa
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DEPENDS libz_src
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UPDATE_COMMAND git clean -ffdx && git checkout -- *
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&& ${CMAKE_COMMAND} -E echo "Copying pre-installed CMakeLists.txt"
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&& ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.bwa_wasm.txt CMakeLists.txt
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&& git apply ../bwa.patch
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CONFIGURE_COMMAND ${CMAKE_COMMAND}
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-DWASI_SDK_PREFIX=${WASISDK_HOME}
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-DCMAKE_TOOLCHAIN_FILE=${WASISDK_TOOLCHAIN}
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-DCMAKE_SYSROOT=${WASISDK_SYSROOT}
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-DCMAKE_C_FLAGS=-isystem\ ${CMAKE_CURRENT_SOURCE_DIR}/../include/sse\ -isystem\ ${CMAKE_CURRENT_SOURCE_DIR}/../include/libc/musl
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${CMAKE_CURRENT_SOURCE_DIR}/bwa
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BUILD_COMMAND make bwa_wasm_opt -j 4
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INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_if_different ./bwa.opt.wasm ${CMAKE_CURRENT_BINARY_DIR}/bwa.wasm
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)
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################ bwa data ################
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ExternalProject_Add(bwa-kit
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PREFIX bwa-kit
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URL https://sourceforge.net/projects/bio-bwa/files/bwakit/bwakit-0.7.15_x64-linux.tar.bz2/download
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URL_HASH SHA256=0a7b11971bc7916b68e9df35a364afe77cb3000df02ffb3a6fbd1aff9be5878c
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DOWNLOAD_NAME bwakit-0.7.15_x64-linux.tar.bz2
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DOWNLOAD_EXTRACT_TIMESTAMP ON
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DOWNLOAD_NO_EXTRACT OFF
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DOWNLOAD_NO_PROGRESS ON
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UPDATE_COMMAND ""
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PATCH_COMMAND ""
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CONFIGURE_COMMAND ""
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BUILD_COMMAND ""
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INSTALL_COMMAND ${CMAKE_COMMAND} -E copy_if_different
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${CMAKE_CURRENT_BINARY_DIR}/bwa-kit/src/bwa-kit/resource-GRCh38/hs38DH-extra.fa
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${CMAKE_CURRENT_BINARY_DIR}/hs38DH-extra.fa
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)
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